NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold 2006893359

Scaffold 2006893359


Overview

Basic Information
Taxon OID2006543006 Open in IMG/M
Scaffold ID2006893359 Open in IMG/M
Source Dataset NameMarine microbial communities from anoxic basin of Saanich Inlet - SI040908_100
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)739
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine → Marine Microbial Communities From Anoxic Basin Of Saanich Inlet In Vancouver, Canada

Source Dataset Sampling Location
Location NameSaanich Inlet, British Columbia, Canada
CoordinatesLat. (o)48.616667Long. (o)-123.5Alt. (m)Depth (m)100
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007003Metagenome / Metatranscriptome360Y

Sequences

Protein IDFamilyRBSSequence
2007040121F007003AGGAMINFYTKNIDTKRYEDIICRIIMLNGSNGKHLSGYYAWENFKDNWELNIIPTTKQEEFKSYYEHLNVETSDGIAWGVTGSKVIYMFVNDSKNPFILRSNIMPLGHELLHAIYQDGVGTHHITRKYDAPEGRAGTKGAAATVIVHDNWYGSKETIRFWVRHSFIWLPITIPYIPIKKAKEDYSI

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